hyrax.verbs.umap

Attributes

logger

Classes

Umap	Umap latent space points into 2d

Module Contents

logger

class Umap(config)

Bases: hyrax.verbs.verb_registry.Verb

Umap latent space points into 2d

__init__()

Overall initialization for all verbs that saves the config

cli_name = 'umap'

add_parser_kwargs

description = 'Transforms the entire dataset into a lower-dimensional space by fitting a UMAP model.'

static setup_parser(parser: argparse.ArgumentParser)

Stub of parser setup

run_cli(args: argparse.Namespace | None = None)

Stub CLI implementation

run(input_dir: pathlib.Path | str | None = None, model_path: pathlib.Path | str | None = None)

Deprecated wrapper for reduce_dimensions running the UMAP algorithm.

This wrapper delegates execution to reduce_dimensions with algorithm='umap' so that umap verb remains available for backward compatibility. But users are encouraged to switch to using reduce_dimensions.

Parameters:

• input_dir (str or Path, Optional) – The directory containing the inference results.

• model_path (str or Path, Optional) – The path to a pre-existing UMAP model.

Returns:

The method does not return anything but saves the UMAP representations to disk.

Return type:

None

_run(input_dir: pathlib.Path | str | None = None, model_path: pathlib.Path | str | None = None)

See run()